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Introduces test cases with real data to ensure results are reproducible. It will not test all possible combination of processing steps due to github actions memory limits, but will sample the key processing step (infant/pediatric setting, and tracking,connectomics,segmentation profiles).

Closes #21

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@gagnonanthony gagnonanthony added this to the v1.0.0-rc1 milestone Feb 18, 2025
@gagnonanthony gagnonanthony removed this from the 0.1.0-alpha milestone Aug 6, 2025
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Complete test case with real data.

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